Core

nDive Movie: Sparse Data-driven Spheres

April 23rd, 2010  |  Published in Advanced Analysis and vis (Core 3), Media Gallery, Medical

3D visualization of magnetic resonance spectroscopy (MRS) data. The background anatomical image is a T1 MRI image containing a bright outline that roughly corresponds to the location of a tumor. The colored spheres are a sphere-based representation of concentrations of different metabolites, which are functional markers. How it works:

  • red spheres = choline
  • green spheres = creatine
  • blue spheres = glutamin
  • yellow spheres = n-acetylaspartate
  • sphere size corresponds to magnitude of the metabolite.

Vesicle and protein segmentation.

October 12th, 2009  |  Published in Advanced Analysis and vis (Core 3), Analysis, Core, ImageSurfer, Media Gallery, Software

vesicleProteinsLiberalThresholdSomeRemoved

Segmented vesicle witih proteins

Segmented vesicle witih proteins

This image (and linked movie) shows a rotating 3D view of a vesicle that was semi-automatically segmented from a 3D TEM image reconstructed from a tilt series.  A handful of seed points were placed in one slice of the image and the 3D vesicle was automatically extracted.  The image also shows a very preliminary automatic segmentation of proteins extending through the vesicle wall; the extent of these proteins is currently clipped by an arbitrary global parameter setting.

nanoManipulator

August 24th, 2001  |  Published in Core, Ideal Microscope Interfaces, Media Gallery, nanoManipulator

The nanoManipulator system provides a virtual-reality interface to scanned-probe microscopes, including interactive 3D graphics and force-feedback (haptic) display and control.  robinett-nano-movie-small shows a movie of the system in operation.

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nanoWorkbench with Viruses

January 1st, 1997  |  Published in Core, Ideal Microscope Interfaces, Media Gallery, nanoManipulator

nanoWorkbench interface for nanoManipulator

nanoWorkbench interface for nanoManipulator

The UNC nanoManipulator (nM) application provided an intuitive interface to scanning-probe microscopes, enabling scientists from a variety of disciplines to examine and manipulate nanometer-scale structures. (Taylor II, Robinett et al. 1993) The nM displayed a 3D rendering of the data as it arrives in real time. Using haptic feedback controls, a scientist could feel the surface representation to enhance understanding of surface properties and to modify the surface directly. The nM greatly increased productivity by acting as a translator between the scientist and the instrument being controlled. (Finch, Chi et al. 1995)

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