CISMM

Computer Integrated Systems for Microscopy and Manipulation
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Tutorials

Natural-science Tutorials

  • FibrinStretchingLab
  • AFM_Imaging_Viruses_with Asylum_Lab
  • MicrofluidicsLab
  • 3DFM-CellMechanicsLab
  • DiffusionInFibrinClotsLab
  • Driven Microbead Rheology Lab

Software Tutorials

Tutorials are available online for the following CISMM-sponsored software.

ImageSurfer

  • Dendritic Spines

ImageTracker

  • Image Stabilization
  • Removal of Stationary Image Components

Microscope Simulator

  • Simulating a Fluorescent Bead

Video Optimizer

  • Actin Motility
  • Spindle Dynamics

Video Spot Tracker

  • Bead Rheology
  • Bead attached to cilia against background of cells
  • Magnetic Bead Calibration
  • Rod-shaped Bacteria Tracking
  • Kymograph

Edge Detector 1D

  • Finding edges in a FRET sample

Template-Based Matching

  • Distribution of angles in dimer proteins

PlotExtractor

  • Recovering data from a published plot

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